But when I click the Import button and import, all the items that were batch unchecked with the javascript program are also imported. Is there anything I can improve
The problem is that your javascript code is changing the checkbox DOM elements, but not the underlying checkbox settings which are stored as fields named selection-tiddlertitle in the auto-generated $:/Import tiddler.
To deselect all existing tiddlers, try the following wikitext $button:
Eric beat me too it but it reminds me that the excluded titles get fields so I can exclude all and make search tools to filter before import. This can include test for existing, by prefix etc…