After upgrading, getting Javascript save and reload

Hello,

Recently I updated a couple of my wikis to 5.4.0. Afterwards I get the please save and refresh to allow changes to Javascript plugins to take effect. Of course, I have done this, but it just keeps showing it. I host my wikis in TiddlyPWA and for the additional plugins, I run Highlight, Projectify, Relink, and Tiddler Commander. I have tried disabling some of the plugins, except TiddlyPWA because I am afraid it will break it and not load anymore.

Any advice?

Thanks!